2022

Frétin, Marie, Amaury Gérard, Anne Ferlay, Bruno Martin, Solange Buchin, Sébastien Theil, Etienne Rifa, et al. 2022. “Integration of Multiomic Data to Characterize the Influence of Milk Fat Composition on Cantal-Type Cheese Microbiota.” Microorganisms 10 (2): 334. doi:https://doi.org/10.3390/microorganisms10020334.
Verdier-Metz, Isabelle, Céline Delbès, Matthieu Bouchon, Philippe Pradel, Sébastien Theil, Etienne Rifa, Agnès Corbin, and Christophe Chassard. 2022. “Influence of Post-Milking Treatment on Microbial Diversity on the Cow Teat Skin and in Milk.” Dairy 3 (2): 262–76. doi:https://doi.org/10.3390/dairy3020021.

2021

Defrel, Gilles, Nathalie Marsaud, Etienne Rifa, Frédéric Martins, et Fayza Daboussi. « Identification of Loci Enabling Stable and High-Level Heterologous Gene Expression ». Frontiers in Bioengineering and Biotechnology 9 (2021): 734902. doi:10.3389/fbioe.2021.734902.
Ropers, Delphine, Yohann Couté, Laëtitia Faure, Sabrina Ferré, Delphine Labourdette, Arieta Shabani, Lidwine Trouilh, et al. « Multiomics Study of Bacterial Growth Arrest in a Synthetic Biology Application ». ACS Synthetic Biology, 5 novembre 2021. doi:10.1021/acssynbio.1c00115.
Piqueras, Justine, Christophe Chassard, Cécile Callon, Etienne Rifa, Sébastien Theil, Annick Lebecque, et Céline Delbès. « Lactic Starter Dose Shapes S. Aureus and STEC O26:H11 Growth, and Bacterial Community Patterns in Raw Milk Uncooked Pressed Cheeses ». Microorganisms 9, nᵒ 5 (mai 2021): 1081. doi:10.3390/microorganisms9051081.

2019

Öztürk, Sibel, İrem Demir, et Pınar Çalık. « Isolation of High‐Quality RNA from Pichia Pastoris ». Current Protocols in Protein Science 98, nᵒ 1 (décembre 2019). doi:10.1002/cpps.101.
Buvignier, Amaury, Matthieu Peyre-Lavigne, Orlane Robin, Mansour Bounouba, Cédric Patapy, Alexandra Bertron, et Etienne Paul. « Influence of Dissolved-Aluminum Concentration on Sulfur-Oxidizing Bacterial Activity in the Biodeterioration of Concrete ». Applied and Environmental Microbiology 85, nᵒ 15 (s. d.): e00302-19. doi:10.1128/AEM.00302-19.
Peiro, Camille, Pierre Millard, Alessandro de Simone, Edern Cahoreau, Lindsay Peyriga, Brice Enjalbert, et Stéphanie Heux. « Chemical and Metabolic Controls on Dihydroxyacetone Metabolism Lead to Suboptimal Growth of Escherichia Coli ». Applied and Environmental Microbiology 85, nᵒ 15 (1 août 2019). doi:10.1128/AEM.00768-19.
Lecomte, Sylvain, Florence Demay, Thu Ha Pham, Solenn Moulis, Théo Efstathiou, Frédéric Chalmel, et Farzad Pakdel. « Deciphering the Molecular Mechanisms Sustaining the Estrogenic Activity of the Two Major Dietary Compounds Zearalenone and Apigenin in ER-Positive Breast Cancer Cell Lines ». Nutrients 11, nᵒ 2 (février 2019): 237. doi:10.3390/nu11020237.
Pizzolato G, Kaminski H, Tosolini M, Franchini D-M, Pont F, Martins F, Valle C, Labourdette D, Cadot S, Quillet-Mary A, Poupot M, Laurent C, Ysebaert L, Meraviglia S, Dieli F, Merville P, Milpied P, Déchanet-Merville J, Fournié J-J. Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of human TCRVδ1 and TCRVδ2 γδ T lymphocytes. PNAS. 2019;116:11906–15. doi:10.1073/pnas.1818488116.
Marsaud N. Séquençage à haut débit - Outils et enjeux pour la santé humaine. Techniques de l’Ingénieur. 2019;:24. https://www.techniques-ingenieur.fr/base-documentaire/biomedical-pharma-th15/nanotechnologies-et-biotechnologies-pour-la-sante-42608210/sequencage-a-haut-debit-bio8205/.

2018

Debaugny RE, Sanchez A, Rech J, Labourdette D, Dorignac J, Geniet F, Palmeri J, Parmeggiani A, Boudsocq F, Anton Leberre V, Walter J, Bouet J. A conserved mechanism drives partition complex assembly on bacterial chromosomes and plasmids. Mol Syst Biol. 2018;14. doi:10.15252/msb.20188516.
Serif M, Dubois G, Finoux A-L, Teste M-A, Jallet D, Daboussi F. One-step generation of multiple gene knock-outs in the diatom Phaeodactylum tricornutum by DNA-free genome editing. Nature Communications. 2018;9:3924. doi:10.1038/s41467-018-06378-9.
Lamarre S, Frasse P, Zouine M, Labourdette D, Sainderichin E, Hu G, Le Berre-Anton V, Bouzayen M, Maza E. Optimization of an RNA-Seq Differential Gene Expression Analysis Depending on Biological Replicate Number and Library Size. Front Plant Sci. 2018;9. doi:10.3389/fpls.2018.00108.
Illikoud N, Klopp C, Roulet A, Bouchez O, Marsaud N, Jaffrès E, Zagorec M. One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070. Standards in Genomic Sciences. 2018;13:22. doi:10.1186/s40793-018-0333-z.
Hoareau-Aveilla C, Quelen C, Congras A, Caillet N, Labourdette D, Dozier C, Brousset P, Lamant L, Meggetto F. MiR-497 suppresses cycle progression through an axis involving CDK6 in ALK-positive cells. Haematologica. 2018;:haematol.2018.195131. doi:10.3324/haematol.2018.195131.
Giraud S, Steichen C, Allain G, Couturier P, Labourdette D, Lamarre S, Ameteau V, Tillet S, Hannaert P, Thuillier R, Hauet T. Dynamic transcriptomic analysis of Ischemic Injury in a Porcine Pre-Clinical Model mimicking Donors Deceased after Circulatory Death. Sci Rep. 2018;8. doi:10.1038/s41598-018-24282-6.

2017

Letaief R, Rebours E, Grohs C, Meersseman C, Fritz S, Trouilh L, Esquerré D, Barbieri J, Klopp C, Philippe R, Blanquet V, Boichard D, Rocha D, Boussaha M. Identification of copy number variation in French dairy and beef breeds using next-generation sequencing. Genetics Selection Evolution. 2017;49:77. doi:10.1186/s12711-017-0352-z.

2016

Naldaiz-Gastesi N, Goicoechea M, Alonso-Martin S, Aiastui A, Lopez-Mayorga M, Garcia-Belda P, Lacalle J, Jose CS, Arauzo-Bravo MJ, Trouilh L, Anton-Leberre V, Herrero D, Matheu A, Bernad A, Garcia-Verdugo JM, Carvajal JJ, Relaix F, Lopez De Munain A, Garcia-Parra P, Izeta A. Identification and characterization of the dermal Panniculus carnosus muscle stem cells. Stem Cell Reports. 2016;7:411–24. doi:10.1016/j.stemcr.2016.08.002.
Chassaing N, Davis EE, McKnight KL, Niederriter AR, Causse A, David V, Desmaison A, LAMARRE S, Vincent-Delorme C, Pasquier L, Coubes C, Lacombe D, Rossi M, Dufier J-L, Dollfus H, Kaplan J, Katsanis N, Etchevers HC, Faguer S, Calvas P. Targeted resequencing identifies PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network. Genome Research. 2016;26:474–85. doi:10.1101/gr.196048.115.
Barasc H, CONGRAS A, Mary N, Trouilh L, MARQUET V, Ferchaud S, Raymond-Letron I, Calgaro A, Loustau A-M, MOUNEY N, ACLOQUE H, Ducos A, Pinton A. Meiotic pairing and gene expression disturbance in germ cells from an infertile boar with a balanced reciprocal autosome-autosome translocation. Chromosome Research. 2016;24:511–27. doi:10.1007/s10577-016-9533-9.
Abot A, Arnal G, Auer L, Lazuka A, Labourdette D, Lamarre S, Trouilh L, Laville E, Lombard V, Potocki-Veronese G, Henrissat B, O’Donohue M, Hernandez-Raquet G, Dumon C, Leberre VA. CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems. BMC Genomics. 2016;17:1–12. doi:10.1186/s12864-016-2988-4.


Remerciements

Aboulela, Amr, Matthieu Peyre Lavigne, Tony Pons, Mansour Bounouba, Maud Schiettekatte, Pascale Lepercq, Myriam Mercade, Cédric Patapy, Samuel Meulenyzer, and Alexandra Bertron. 2022. “The Fate of Tetrathionate during the Development of a Biofilm in Biogenic Sulfuric Acid Attack on Different Cementitious Materials.” Science of The Total Environment 850 (December): 158031. doi:https://doi.org/10.1016/j.scitotenv.2022.158031.
Fournier, Elora, Sylvain Denis, Alessandra Dominicis, Tom Van de Wiele, Monique Alric, Muriel Mercier-Bonin, Lucie Etienne-Mesmin, and Stéphanie Blanquet-Diot. 2022. “A Child Is Not an Adult: Development of a New in Vitro Model of the Toddler Colon.” Applied Microbiology and Biotechnology 106 (21): 7315–36. doi:https://doi.org/10.1007/s00253-022-12199-0.
Laguillaumie, Léa, Yan Rafrafi, Elisabeth Moya-Leclair, Delphine Delagnes, Simon Dubos, Mathieu Spérandio, Etienne Paul, and Claire Dumas. 2022. “Stability of Ex Situ Biological Methanation of H2/CO2 with a Mixed Microbial Culture in a Pilot Scale Bubble Column Reactor.” Bioresource Technology 354 (June): 127180. doi:https://doi.org/10.1016/j.biortech.2022.127180.
Laroute, Valérie, Catherine Beaufrand, Pedro Gomes, Sébastien Nouaille, Valérie Tondereau, Marie-Line Daveran-Mingot, Vassilia Theodorou, Hélène Eutamene, Muriel Mercier-Bonin, and Muriel Cocaign-Bousquet. 2022. “Lactococcus Lactis NCDO2118 Exerts Visceral Antinociceptive Properties in Rat via GABA Production in the Gastro-Intestinal Tract.” Edited by Gisela Storz. ELife 11 (June): e77100. doi:https://doi.org/10.7554/eLife.77100.
Nguyen, Huong Le, Marie-Pierre Duviau, Sandrine Laguerre, Sébastien Nouaille, Muriel Cocaign-Bousquet, and Laurence Girbal. 2022. “Synergistic Regulation of Transcription and Translation in Escherichia Coli Revealed by Codirectional Increases in MRNA Concentration and Translation Efficiency.” Microbiology Spectrum 10 (1): e0204121. doi:https://doi.org/10.1128/spectrum.02041-21.
Pregnon, Guillaume, Nigel P. Minton, and Philippe Soucaille. 2022. “Genome Sequence of Eubacterium Limosum B2 and Evolution for Growth on a Mineral Medium with Methanol and CO2 as Sole Carbon Sources.” Microorganisms 10 (9): 1790. doi:https://doi.org/10.3390/microorganisms10091790.
Paccoud, Romain, Céline Saint-Laurent, Enzo Piccolo, Mylène Tajan, Alizée Dortignac, Ophélie Pereira, Sophie Le Gonidec, et al. « SHP2 Drives Inflammation-Triggered Insulin Resistance by Reshaping Tissue Macrophage Populations ». Science Translational Medicine 13, nᵒ 591 (28 avril 2021). doi:10.1126/scitranslmed.abe2587. (remerciements
Millard, Pierre, Brice Enjalbert, Sandrine Uttenweiler-Joseph, Jean-Charles Portais, et Fabien Létisse. « Control and regulation of acetate overflow in Escherichia coli ». Édité par Michael Doebeli et Naama Barkai. eLife 10 (15 mars 2021): e63661. doi:10.7554/eLife.63661.
Arnould, Coline, Vincent Rocher, Anne-Laure Finoux, Thomas Clouaire, Kevin Li, Felix Zhou, Pierre Caron, et al. « Loop Extrusion as a Mechanism for Formation of DNA Damage Repair Foci ». Nature 590, nᵒ 7847 (février 2021): 660‑65. doi:10.1038/s41586-021-03193-z.
Courtot, Lilas, Elodie Bournique, Chrystelle Maric, Laure Guitton-Sert, Miguel Madrid-Mencía, Vera Pancaldi, Jean-Charles Cadoret, Jean-Sébastien Hoffmann, et Valérie Bergoglio. « Low Replicative Stress Triggers Cell-Type Specific Inheritable Advanced Replication Timing ». International Journal of Molecular Sciences 22, nᵒ 9 (janvier 2021): 4959. doi:10.3390/ijms22094959.
Pavlovic, Marion, Christelle Gross, Chahinaize Chili, Thomas Secher, et Emmanuel Treiner. « MAIT Cells Display a Specific Response to Type 1 IFN Underlying the Adjuvant Effect of TLR7/8 Ligands ». Frontiers in Immunology 11 (8 septembre 2020): 2097. doi:10.3389/fimmu.2020.02097.
Tauzin, Alexandra S., Mariana Rangel Pereira, Liisa D. Van Vliet, Pierre-Yves Colin, Elisabeth Laville, Jeremy Esque, Sandrine Laguerre, et al. « Investigating Host-Microbiome Interactions by Droplet Based Microfluidics ». Microbiome 8, nᵒ 1 (décembre 2020): 141. doi:10.1186/s40168-020-00911-z.
Bertorello, Juliette, Julie Sesen, Julia Gilhodes, Solène Evrard, Monique Courtade-Saïdi, Meera Augustus, Emmanuelle Uro-Coste, et al. « Translation Reprogramming by EIF3 Linked to Glioblastoma Resistance ». NAR Cancer 2, nᵒ 3 (1 septembre 2020): zcaa020. doi:10.1093/narcan/zcaa020.
De Simone, A., C. M. Vicente, C. Peiro, L. Gales, F. Bellvert, B. Enjalbert, et S. Heux. « Mixing and Matching Methylotrophic Enzymes to Design a Novel Methanol Utilization Pathway in E. Coli ». Metabolic Engineering 61 (1 septembre 2020): 315‑25. doi:10.1016/j.ymben.2020.07.005.
Morin, Manon, Brice Enjalbert, Delphine Ropers, Laurence Girbal, et Muriel Cocaign-Bousquet. « Genomewide Stabilization of MRNA during a “Feast-to-Famine” Growth Transition in Escherichia Coli ». Édité par Craig D. Ellermeier. MSphere 5, nᵒ 3 (20 mai 2020): e00276-20, /msphere/5/3/mSphere276-20.atom. doi:10.1128/mSphere.00276-20.
Wang, Zhi, Alexandra S. Tauzin, Elisabeth Laville, Pietro Tedesco, Fabien Létisse, Nicolas Terrapon, Pascale Lepercq, Myriam Mercade, et Gabrielle Potocki-Veronese. « Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria ». Édité par Vincent B. Young. MSphere 5, nᵒ 1 (8 janvier 2020): e00771-19, /msphere/5/1/mSphere771-19.atom. doi:10.1128/mSphere.00771-19.
Öztürk, Sibel, İrem Demir, and Pınar Çalık. 2019. “Isolation of High‐Quality RNA from Pichia Pastoris.” Current Protocols in Protein Science 98 (1). doi:10.1002/cpps.101.